PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G19990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 151aa    MW: 15987.7 Da    PI: 7.574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G19990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-054870123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C ++F ++  L  H++ H
  LPERR08G19990.1 48 FSCTYCRRTFYSSQALGGHQNAH 70
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-44473IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.16E-74475No hitNo description
PROSITE profilePS5015711.2194875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEKEIISVRS TTTAAAGDDD DISLDLRLRN NPPPLAGGGE VEYKERAFSC TYCRRTFYSS  60
QALGGHQNAH KLERSLAKRS RDLSGAISAA DQLASWSPAA YSPAAGDRAA AAVVSWIADG  120
GRRRHGYRVH AAAAGGDVAA ATEDIDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G19990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648530.13e-40zinc finger protein 2
TrEMBLA0A0D9XAR81e-104A0A0D9XAR8_9ORYZ; Uncharacterized protein
STRINGLPERR08G19990.11e-105(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-18zinc finger protein 2