PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G20650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 213aa    MW: 23164.8 Da    PI: 7.5852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G20650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-1854104155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++  +g+WvAeIr+p   + r +r +lg+f +a +Aa+a++ a+++l+g
  LPERR08G20650.1  54 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNSALDAARAYDSAARALYG 104
                      679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.33655112IPR001471AP2/ERF domain
SMARTSM003804.1E-3155118IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1956112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-2856112IPR001471AP2/ERF domain
PRINTSPR003674.5E-95667IPR001471AP2/ERF domain
CDDcd000181.79E-2456108No hitNo description
PfamPF008471.2E-1156104IPR001471AP2/ERF domain
PRINTSPR003674.5E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MESSLVNNNK GKVVGENCCS SRRKQASGSR KCCPLRRSRK GCMKGKGGPE NQRCPFRGVR  60
QRTWGKWVAE IREPNRGARL WLGTFNSALD AARAYDSAAR ALYGDCARLN LTNLATTAAA  120
ASACTTSTDD SNDNSTPPPP LQLDDSYISQ TTRQDQEEVD FETYVTRLPK AEDFGLDGFH  180
EVAALDDEAG ISIWDLSICP ADFMATTTAA AAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1456111662ATERF1
3gcc_A5e-1456111662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G20650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081431e-111AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046231e-111AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054111e-111AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149641e-111AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393751e-111AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126161e-111CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.15e-88dehydration-responsive element-binding protein 2C
SwissprotQ84ZA17e-89DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0D9XB061e-156A0A0D9XB06_9ORYZ; Uncharacterized protein
STRINGLPERR08G20650.11e-157(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-27ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]