PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G00310.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GeBP

Protein Properties

Length: 380aa MW: 42622.7 Da PI: 10.5716

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G00310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	34.8	4.5e-11	179	266	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis..fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +r w+ +Dei++L +l+ + + p++ + f++ + ++++ +++++++ eK+r+LK++f + +k+h+ + ++ls+++ LPERR09G00310.1 179 RRRWNAHDEIMILEALVHHIRNGQMLPQQPGHPFFHAIAQRLQgtTTFNHNDVREKLRSLKRRFDNAAIP--------PTKDHELHLYQLSSQL 264 789**************999999***********998446799*************998776........6788888899999988 PP DUF573 96 Wg 97 W LPERR09G00310.1 265 WA 266 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-13	179	265	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MASKRVRSSP SDGHARSASS GGGEPPPQID NVAVAAQSPT SALAEEEGVA AESEEEAAGD 60 GAEPDNSRRV TALPSKEAPV QEDPKPASKS NKKNMMMMKK KRPLRAAQSQ LEVLPPKSKK 120 KKTKAVLQPA ARGKAKKKQH DDIAETPSLR KSQRLAAASS GNTSPPHPNK KKKEITALRR 180 RWNAHDEIMI LEALVHHIRN GQMLPQQPGH PFFHAIAQRL QGTTTFNHND VREKLRSLKR 240 RFDNAAIPPT KDHELHLYQL SSQLWAPHAM DKQSKPLATH QQRSFATDDH KSCAMDDHEE 300 RSFDDMCSQF PQLAKEINVL AEDLPAVRKS FARLDSKQAV AIETKLEKLR WFDMKMQYKV 360 KVKMAKIRKE LLHHLMELRP

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MASKRVRSSP SDGHARSASS GGGEPPPQID NVAVAAQSPT SALAEEEGVA AESEEEAAGD  60
GAEPDNSRRV TALPSKEAPV QEDPKPASKS NKKNMMMMKK KRPLRAAQSQ LEVLPPKSKK  120
KKTKAVLQPA ARGKAKKKQH DDIAETPSLR KSQRLAAASS GNTSPPHPNK KKKEITALRR  180
RWNAHDEIMI LEALVHHIRN GQMLPQQPGH PFFHAIAQRL QGTTTFNHND VREKLRSLKR  240
RFDNAAIPPT KDHELHLYQL SSQLWAPHAM DKQSKPLATH QQRSFATDDH KSCAMDDHEE  300
RSFDDMCSQF PQLAKEINVL AEDLPAVRKS FARLDSKQAV AIETKLEKLR WFDMKMQYKV  360
KVKMAKIRKE LLHHLMELRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	121	KKRPLRAAQSQLEVLPPKSKKKK
2	130	138	ARGKAKKKQ
3	132	138	GKAKKKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G00310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644071.1	2e-63	basic salivary proline-rich protein 2
TrEMBL	A0A0D9XB69	0.0	A0A0D9XB69_9ORYZ; Uncharacterized protein
STRING	LPERR09G00310.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17455	9	10