PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G01400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 125aa    MW: 13630.8 Da    PI: 9.6743
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G01400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP87.41.7e-2747120170
                      --SSTT-----TT-....-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
              SBP   1 lCqvegCeadlsea....keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                      +Cq++gC adl+ +     +y+rrhkvC +h kapvvlv+g+++rfCq+Cs+fhels fD++kr Crr La   
  LPERR09G01400.1  47 ICQADGCLADLNATttmsMKYFRRHKVCVAHFKAPVVLVTGHRRRFCQRCSKFHELSRFDDSKRICRRGLAALR 120
                      5**********875333368************************************************999755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114123.2345125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-2546119IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.1E-2546113IPR004333Transcription factor, SBP-box
PfamPF031104.7E-2348122IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDHDSSSTAY SMVPLTTAIT AVGVVDGGTP PPPSSVEAAG GGVLIVICQA DGCLADLNAT  60
TTMSMKYFRR HKVCVAHFKA PVVLVTGHRR RFCQRCSKFH ELSRFDDSKR ICRRGLAALR  120
ARYPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1838122181squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G01400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260271.14e-26PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387413e-21SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0D9XBL85e-87A0A0D9XBL8_9ORYZ; Uncharacterized protein
STRINGLPERR09G01400.18e-88(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-21squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]