PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G02820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 213aa    MW: 24111.4 Da    PI: 5.6758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G02820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1896144355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +grW++eIrdp+    r  r++lg+f+tae+Aa+a++a  ++++g
  LPERR09G02820.1  96 YRGIRQRP-WGRWASEIRDPV----RgVRVWLGTFDTAEDAARAYDAEVRRIHG 144
                      9*******.**********63....56*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-3695158IPR001471AP2/ERF domain
PROSITE profilePS5103223.24895152IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2196154IPR016177DNA-binding domain
PRINTSPR003677.9E-1296107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-3296154IPR001471AP2/ERF domain
PfamPF008471.3E-1096137IPR001471AP2/ERF domain
CDDcd000181.19E-2896154No hitNo description
PRINTSPR003677.9E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKQKSTRNHK SWRRRLVADD EDDWEAAFRD FLSRDDDDDD DFESNDFIIA APPIRNKCVH  60
GHSHATPPPG GDDDTRCHGE RSPTARRRRE RRSYPYRGIR QRPWGRWASE IRDPVRGVRV  120
WLGTFDTAED AARAYDAEVR RIHGRKAKTN FPQSPAATDQ PPASAATTPT TEEEGSGGDS  180
RILLECCSDE LMDSLLAGFD IAAGGDIDMR IWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1996152663ATERF1
3gcc_A2e-1996152663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G02820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7204639e-58FR720463.1 Oryza eichingeri partial sub1C-1 like gene 1, bio material IRGC 101429.
GenBankFR7204649e-58FR720464.1 Oryza eichingeri partial sub1C-1 like gene 2, bio material IRGC 101429.
GenBankFR7204669e-58FR720466.1 Oryza eichingeri partial sub1C-1 like gene 4, bio material IRGC 101429.
GenBankHM1178399e-58HM117839.1 Oryza rhizomatis hypothetical protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.14e-56ethylene-responsive transcription factor 1-like
TrEMBLA0A0D9XC321e-153A0A0D9XC32_9ORYZ; Uncharacterized protein
STRINGLPERR09G02820.11e-154(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP179721010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-23ERF family protein