PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G02840.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 234aa    MW: 25815.9 Da    PI: 4.541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G02840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1787135355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+W++eIrdp+       r +lg+f+tae+Aa+a++a +++++g
  LPERR09G02840.1  87 YHGIRKRP-WGKWASEIRDPV----MgVRLWLGTFDTAEDAARAYDAEARRIHG 135
                      99******.**********63....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.72186143IPR001471AP2/ERF domain
SMARTSM003807.9E-3586149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3086144IPR001471AP2/ERF domain
PRINTSPR003678.1E-118798IPR001471AP2/ERF domain
CDDcd000188.48E-3187143No hitNo description
PfamPF008471.1E-887135IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2087144IPR016177DNA-binding domain
PRINTSPR003678.1E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MCGGQGDPND VPAVTLLNKT KTKTKKKRDS DEEYWEAAFQ EFLAEDDLLP AALGATTAMP  60
RYSLPAVADD EAGRPRRRRR EKKSNEYHGI RKRPWGKWAS EIRDPVMGVR LWLGTFDTAE  120
DAARAYDAEA RRIHGRNAKT NFPSDEPPAA TLCCLLCTVD DLATTPSTSA GCDDHGPIVL  180
ECCSDDVMDS LLAGDDGRVL LECCSDDVMD TLLAGFDVSN SNRDRDIWSL VQLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1883143263ATERF1
3gcc_A1e-1883143263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17592RRRRREKKSNEYHGIRKR
27681RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G02840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7204646e-50FR720464.1 Oryza eichingeri partial sub1C-1 like gene 2, bio material IRGC 101429.
GenBankHM1178396e-50HM117839.1 Oryza rhizomatis hypothetical protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XC341e-171A0A0D9XC34_9ORYZ; Uncharacterized protein
STRINGLPERR09G02840.11e-171(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-21ERF family protein