PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G02880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 209aa    MW: 22936.9 Da    PI: 6.115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G02880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-174290355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r++  +g+W++eIrdp+    r  r +lg+f+tae+Aa+a++a +++++g
  LPERR09G02880.1 42 YHGIRQRA-WGKWASEIRDPV----RgVRLWLGTFDTAEDAARAYDAEARRIHG 90
                     89***998.**********63....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-304199IPR001471AP2/ERF domain
SMARTSM003801.2E-3341104IPR001471AP2/ERF domain
PROSITE profilePS5103222.3524198IPR001471AP2/ERF domain
PfamPF008475.6E-94290IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-214299IPR016177DNA-binding domain
PRINTSPR003672.0E-104253IPR001471AP2/ERF domain
CDDcd000181.41E-304298No hitNo description
PRINTSPR003672.0E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MCGGGHLIPK SNDMPAVAQA DERPRRVQRR PRRKRPSYAY EYHGIRQRAW GKWASEIRDP  60
VRGVRLWLGT FDTAEDAARA YDAEARRIHG RKAKTNFPSD EPPASTLCCL LCTVDDLATT  120
PSTSGGCDGH GRILLECCSD DVMDSLLAAA DDGGRITLEC CADDVMDSLL AGFDVSNSIM  180
DRDIWSLGSQ KPSSRMSTLA NLEQALLCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-184298360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G02880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7204643e-45FR720464.1 Oryza eichingeri partial sub1C-1 like gene 2, bio material IRGC 101429.
GenBankHM1178393e-45HM117839.1 Oryza rhizomatis hypothetical protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696560.14e-34PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0D9XC411e-151A0A0D9XC41_9ORYZ; Uncharacterized protein
STRINGLPERR09G02880.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-19ERF family protein