PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G03210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 251aa    MW: 27527.5 Da    PI: 8.4784
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G03210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.57.2e-342074155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  LPERR09G03210.1 20 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 74
                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7861777IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-331775IPR009057Homeodomain-like
SuperFamilySSF466893.05E-181974IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-262175IPR006447Myb domain, plants
PfamPF002493.1E-92273IPR001005SANT/Myb domain
PfamPF143794.9E-23107152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MESGGNNMGS DNGANNNSAR QRLRWTNELH ERFVEAVTQL GGPDRATPKG VLRIMGVQGL  60
TIYHVKSHLQ KYRLAKYIPD SSADGNKAEN KDSGDLLAGL EGSSGLQISE ALKLQMEVQK  120
RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ QRLGGVKSET PATGASVTLP SDQFPDSERT  180
DPSTPAPTSE SPTQGVPSNR DNRGLNEATK SPHHDDSLSR HELLTPDSNC QPGSPTISPK  240
HERAAKRQRG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-242077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-242077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-242077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-242077158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G03210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032410.0AK103241.1 Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611984.11e-173myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-100PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0D9XC850.0A0A0D9XC85_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9XC870.0A0A0D9XC87_9ORYZ; Uncharacterized protein
STRINGLPERR09G03210.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-75G2-like family protein