PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G03320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 152aa    MW: 17046 Da    PI: 9.0017
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G03320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.71.3e-132984358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                     ++kr rrk++NRe+ArrsR RK++ ++eL+  v +L+++ ++L   l+  +++  +
  LPERR09G03320.1 29 DRKRKRRKESNRESARRSRMRKQQHLDELTAQVSQLKNQSQQLSMALSLTTQNLVE 84
                     68*****************************************9888877766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-112376No hitNo description
SMARTSM003381.5E-142791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1852992IPR004827Basic-leucine zipper domain
PfamPF001702.7E-103078IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-113182No hitNo description
CDDcd147021.45E-153280No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSGTSSGSS QGTQSSRSED DLNLQAQMDR KRKRRKESNR ESARRSRMRK QQHLDELTAQ  60
VSQLKNQSQQ LSMALSLTTQ NLVEVQAQNS VLQTQKMELQ SRLCALTDIL MCMNSSTNNI  120
SATTIPATTS ACDIFGASSW NQPIDLYQYQ CF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934RKRKRR
22935RKRKRRK
32936RKRKRRKE
43035KRKRRK
53136RKRRKE
64350RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G03320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649031e-150AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence.
GenBankAK0723601e-150AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence.
GenBankAK0988691e-150AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence.
GenBankCT8330391e-150CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence.
GenBankCT8330401e-150CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660520.14e-78PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0D9XC981e-105A0A0D9XC98_9ORYZ; Uncharacterized protein
STRINGLPERR09G03320.11e-106(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-13basic leucine-zipper 44