PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G04330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 336aa    MW: 36267.6 Da    PI: 6.8748
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G04330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.6e-27118178259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++ed ++++++Y+g+H+++
  LPERR09G04330.1 118 DDGHSWRKYGQKEILGAKHPRGYYRCTHRnsqGCLATKQVQRTDEDATLFDVIYHGDHTCN 178
                      8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27106179IPR003657WRKY domain
PROSITE profilePS5081121.987112175IPR003657WRKY domain
SuperFamilySSF1182907.19E-25113179IPR003657WRKY domain
SMARTSM007742.7E-38117179IPR003657WRKY domain
PfamPF031067.6E-26118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEGNGGGRLV VTELSHIKEL VKQLEVHLGG GSPDLCKHLT SQIFTVTERS IGIIRSCQFD  60
GHHRKRAAGD LESATPSPLS DVSDLPFKAT KKRKASMEKK RQQIRVSSTG GVENPPIDDG  120
HSWRKYGQKE ILGAKHPRGY YRCTHRNSQG CLATKQVQRT DEDATLFDVI YHGDHTCNHQ  180
KTAAVAGKPQ PEMDTNAARN RLHDLSSGLK VKTELPRQDS WNAMPFCLSS PVSGLAPPER  240
HPFSAPSTPE NYCLLGGGVP SASPATSDSN HLSAVAGATP FPVAGDAEWR GAEFQEVVSA  300
LVAATATVAA PPPAMDADEC FEFDPDFTID ISSFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21117177868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G04330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696543.11e-161PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0D9XCM70.0A0A0D9XCM7_9ORYZ; Uncharacterized protein
STRINGLPERR09G04330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-35WRKY DNA-binding protein 46