PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G05230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 129aa    MW: 14605.8 Da    PI: 10.4731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G05230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.91e-074365123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k+F++  nL+ H r H
  LPERR09G05230.1 43 FVCEVCSKRFKQEQNLQMHRRAH 65
                     89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.86E-64066No hitNo description
Gene3DG3DSA:3.30.160.604.5E-74265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-54365IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6764365IPR007087Zinc finger, C2H2
SMARTSM003550.00144365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM003555784115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MTDESSSSPA TKKAKKPSVP VTPAGPAEVI ALSPKTLLAT NQFVCEVCSK RFKQEQNLQM  60
HRRAHNLPWS LKRKEVNPAR RQVYVCPEPT CVHHDPAACA LTDLSAIRKH FRSKHGGKNR  120
HYYDKVYRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G05230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227341.13e-44PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_017227342.13e-44PREDICTED: protein indeterminate-domain 4, chloroplastic-like
SwissprotQ9ZUL33e-41IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D9XD068e-92A0A0D9XD06_9ORYZ; Uncharacterized protein
STRINGLPERR09G05230.11e-92(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.14e-41indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]