PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 215aa    MW: 24060.2 Da    PI: 5.3234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.84.9e-2412931092
              NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
                     td+elv++yL++k ++k+l++ e ik+ diyk++ wdLp  ++++ kewyf++krd+ky+++ r++r+t +g+Wkatg+d ++
  LPERR09G07020.1 12 TDDELVNFYLRRKDQQKPLSI-ELIKSPDIYKYDTWDLPVFASSGGKEWYFYCKRDRKYQNSLRPTRVTGAGFWKATGTDSKL 93
                     8********************.89***************8788899*********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.6863163IPR003441NAC domain
PfamPF023656.1E-91292IPR003441NAC domain
SuperFamilySSF1019419.15E-251291IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVEVIWTRGC TTDDELVNFY LRRKDQQKPL SIELIKSPDI YKYDTWDLPV FASSGGKEWY  60
FYCKRDRKYQ NSLRPTRVTG AGFWKATGTD SKLSICFGEF LLLSRSCNTD NSVEQSAVPA  120
MAAAEARQFT CDGSSCKVIN FQCSPSLTHQ SDKDNHSCPV TLLFETQTLL TLSVATSPLL  180
RITPGITNGI YEASSNIAFG QAESCNGYEV EWVIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-2389420106Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G07020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XDP01e-160A0A0D9XDP0_9ORYZ; Uncharacterized protein
STRINGLPERR09G07020.11e-161(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-39NAC family protein