PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G07070.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ZF-HD

Protein Properties

Length: 100aa MW: 10947.2 Da PI: 7.3116

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G07070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	96.6	2e-30	19	77	1	60
ZF-HD_dimer 1 kekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++vrY eC++NhAa++GghavDGC+Ef+++ +egtaaalkCaACgCHR+FHRr +++e LPERR09G07070.1 19 CCGVRYGECRRNHAATTGGHAVDGCREFIAA-AAEGTAAALKCAACGCHRSFHRRVQVYE 77 5789************************9.8889*****************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-25	1	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.7E-29	22	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.0E-23	23	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.327	24	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MMKRLVVLRR REPAVRFSCC GVRYGECRRN HAATTGGHAV DGCREFIAAA AEGTAAALKC 60 AACGCHRSFH RRVQVYEVAW DYDCADDDVD TLSSSSSSDD

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G07070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058840	7e-66	AK058840.1 Oryza sativa Japonica Group cDNA clone:001-004-D10, full insert sequence.
GenBank	AP005636	7e-66	AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBank	AP014965	7e-66	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	7e-66	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	CT830576	7e-66	CT830576.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030C08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799866.1	1e-45	mini zinc finger protein 3-like
Swissprot	Q6ER22	1e-40	MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBL	A0A0D9XDP9	7e-66	A0A0D9XDP9_9ORYZ; Uncharacterized protein
STRING	LPERR09G07070.1	1e-66	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	3e-15	mini zinc finger 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]