PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 353aa    MW: 36712.4 Da    PI: 7.9292
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.1e-333792458
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                     ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRr +e
  LPERR09G07080.1 37 TVYRECLKNHAASLGGHALDGCGEFMPSPAANaADPTSLKCAACGCHRNFHRRLPE 92
                     78***************************99999*******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.4E-283790IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.6823990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-303989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-233989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.48E-16202269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-28205270IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-22211267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEAVMDVKYK PLVFPNGAVK KAVKPAAAVA PAAVGETVYR ECLKNHAASL GGHALDGCGE  60
FMPSPAANAA DPTSLKCAAC GCHRNFHRRL PEGSPPPPAL PAPPPPPPPP PAMLHRGEET  120
PPEMRLPGVV VDGDESDSDS DGSEYDDDRS LSPPPPPHHQ AYYPSAAVAP HMLLSLGSTG  180
QVAAAAAGRL PPQQMVSPAT APAMGGGGMP RKRFRTKFTP EQKQRMQELS ERLGWRLQKR  240
DEAIVDEWCR DIGVGKGVFK VWMHNNKHNY LGGHSARRSA SSSSAAAHLQ PSAAAAVINT  300
TPLPPPHTNH TSPPPPPTAA AAAPVADFNI NGTATAAAAA VQENGGGSSP QSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-202112691775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G07080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0695001e-113AK069500.1 Oryza sativa Japonica Group cDNA clone:J023022H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.21e-110uncharacterized protein LOC100279452
SwissprotQ6ER211e-109ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0D9XDQ00.0A0A0D9XDQ0_9ORYZ; Uncharacterized protein
STRINGLPERR09G07080.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-45homeobox protein 34