PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G07210.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 483aa MW: 47899.4 Da PI: 6.7696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G07210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.9e-12	265	310	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq LPERR09G07210.1 265 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 310 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.33E-16	258	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.73E-12	258	313	No hit	No description
PROSITE profile	PS50888	17.39	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	262	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-9	265	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MQPTTREMQA MAAAAAAGGA GQISLDDLRN GHAANAGGGG GVHDDFLDQM LSSLPPSAWP 60 DLAAAAAKAA EDDAAAEGMH HHHQQFGGPP TPYDESAMLA SRLRQHQISG GGGGGGGGGG 120 AAAVKQMVLQ QLADLRQGHH MMLHGMGRSP ASGGGGGGDG GGGLLLPLSL GSGGGGSGGD 180 VQALLKAATA NSAGGGDDGV YGGFAGSLQQ QQQHFQPHPQ TTAPTMPTQS FGGGGGAAQA 240 QAGGGAPAPP RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD 300 EIIDYVKFLQ LQVLSMSRLG GAAAVAPLVA DMSSEGRGGG AANGGGAPAA AASDSLTVTE 360 QQVAKLMEED MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVAAQHI PAGLAAAAAH 420 HQQLAMRGHH HLLPGLNPDG SVPPSPSMSV LTAQSAMANG GGGGGGDGEG GSQPKDAASV 480 SKP

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MQPTTREMQA MAAAAAAGGA GQISLDDLRN GHAANAGGGG GVHDDFLDQM LSSLPPSAWP  60
DLAAAAAKAA EDDAAAEGMH HHHQQFGGPP TPYDESAMLA SRLRQHQISG GGGGGGGGGG  120
AAAVKQMVLQ QLADLRQGHH MMLHGMGRSP ASGGGGGGDG GGGLLLPLSL GSGGGGSGGD  180
VQALLKAATA NSAGGGDDGV YGGFAGSLQQ QQQHFQPHPQ TTAPTMPTQS FGGGGGAAQA  240
QAGGGAPAPP RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  300
EIIDYVKFLQ LQVLSMSRLG GAAAVAPLVA DMSSEGRGGG AANGGGAPAA AASDSLTVTE  360
QQVAKLMEED MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVAAQHI PAGLAAAAAH  420
HQQLAMRGHH HLLPGLNPDG SVPPSPSMSV LTAQSAMANG GGGGGGDGEG GSQPKDAASV  480
SKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	274	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G07210.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146637.1	1e-161	transcription factor bHLH66-like isoform X1
Swissprot	Q9ZUG9	4e-77	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D9XDR9	0.0	A0A0D9XDR9_9ORYZ; Uncharacterized protein
STRING	LPERR09G07210.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-46	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]