PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 327aa    MW: 34929.3 Da    PI: 8.3489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29172231159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsa+d +v++ tYegeHnh+
  LPERR09G07230.1 172 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSADDSSVLVATYEGEHNHP 231
                      58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.014167233IPR003657WRKY domain
SuperFamilySSF1182901.31E-25169233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-28169233IPR003657WRKY domain
SMARTSM007741.7E-34172232IPR003657WRKY domain
PfamPF031061.2E-24173231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDAAWRGGVG CAPVCLDLCV GRSPVREPSP ATARHELLDR LSSCGGGDST MMTNEAKILE  60
AKVTQMSEEN RRLTEMITRL YGTQIARNGI DSTNSPSPPP RPVSPSLTTG KKRGRESMDT  120
ANSCDANNNN NNQKITGADA ESFGVDDGTA CRRIKVSRVC RRIDPSDTTL VVKDGYQWRK  180
YGQKVTRDNP SPRAYFRCAF APSCPVKKKV QRSADDSSVL VATYEGEHNH PHPSPRAGDL  240
PSPAAAASLP CSISINSSGP TITLDLTKNG GGVQAATAAA DMKEVCREVA SPEFRSALVE  300
QMASALTSDP KFTGALAAAI MQKLPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201712331374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G07230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610695.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK50.0WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A0D9XDS10.0A0A0D9XDS1_9ORYZ; Uncharacterized protein
STRINGLPERR09G07230.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-55WRKY DNA-binding protein 40