PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07850.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 168aa    MW: 19448.6 Da    PI: 10.0109
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.1e-093186156
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                     s+y+GV+  +++g+++A+ +d   +  g+ k+ + g ++t+e+Aa+a++ a +k++g+
  LPERR09G07850.1 31 SQYRGVT--RWTGKYEAHFWDnSFKkEGQAKKGRQGGYDTEEKAARAYDLATLKYWGH 86
                     78****7..48*******8883222333336666688******************997 PP
2AP239.11.8e-12116162655
              AP2   6 VrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +r+++++grW A+I  + e g +k  +lg+f t eeAa+ ++ a+ k++g
  LPERR09G07850.1 116 IRRHHQQGRWQARIGRV-E-G-NKDLYLGTFATQEEAAEVYDVAAIKFRG 162
                      79***********9994.2.2.5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-133193No hitNo description
SuperFamilySSF541714.18E-133194IPR016177DNA-binding domain
PROSITE profilePS5103214.1043293IPR001471AP2/ERF domain
SMARTSM003807.0E-153299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-113294IPR001471AP2/ERF domain
PfamPF008471.6E-53286IPR001471AP2/ERF domain
PROSITE profilePS5103215.633111168IPR001471AP2/ERF domain
SMARTSM003802.4E-16115168IPR001471AP2/ERF domain
PfamPF008476.3E-7116162IPR001471AP2/ERF domain
CDDcd000181.38E-17118168No hitNo description
Gene3DG3DSA:3.30.730.101.3E-13118168IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-12118168IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAAIDAVGKK RGGGQQQQHR KSIDTFGQTS SQYRGVTRWT GKYEAHFWDN SFKKEGQAKK  60
GRQGGYDTEE KAARAYDLAT LKYWGHTTHI NFPLEQYQED LEFMKNMNKE QYVAHIRRHH  120
QQGRWQARIG RVEGNKDLYL GTFATQEEAA EVYDVAAIKF RGRNTVTN
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G07850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417124e-41AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694507.15e-83PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
RefseqXP_027347330.16e-83AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z022e-80CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D9XDZ51e-121A0A0D9XDZ5_9ORYZ; Uncharacterized protein
STRINGLPERR09G07850.11e-122(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-77AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]