PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G08540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 367aa    MW: 39839.4 Da    PI: 9.7174
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G08540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK49.77.3e-16187236250
           RWP-RK   2 ekeisledlskyFslpikdAAk.eLgvclTvLKriCRqyGIkRWPhRkik 50 
                       k ++ +dl++yF+l+ kdAA   L++++T+LK  CR +G++ WP+Rki+
  LPERR09G08540.1 187 IKAMTRKDLESYFHLTQKDAALiGLDIGTTALKNLCRANGLSNWPYRKIA 236
                      57899****************736*************************7 PP
2RWP-RK383.4e-123003411050
           RWP-RK  10 lskyFslpikdAAk.eLgvclTvLKriCRqyGIkRWPhRkik 50 
                      l++y + + kd+A   Lg+++TvLK  CR +G++ WP+Rki+
  LPERR09G08540.1 300 LESYLHITQKDVALiGLGIGTTVLKNLCRANGLSNWPYRKIA 341
                      7889999999998636*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.333174258IPR003035RWP-RK domain
PfamPF020421.1E-15190236IPR003035RWP-RK domain
PROSITE profilePS5151912.491277364IPR003035RWP-RK domain
PfamPF020421.0E-11300341IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MATGGSSSSS NVPTGGGAAD SGSGKTPMKF VPVEAIECLR KRCKLMRVLI HVNDQRKAVV  60
VLHGGEDGKP DHIMLQNVPA EDGSLQSTYS VDVSGWTPES QTEALDEWHA TFRSDATGVF  120
YDSNQNVIYG VPRGHPGGDM PRSLAIAPKK NEQGKAPAAA GSSSSADGPV LVVQAEKYCY  180
PEQRKRIKAM TRKDLESYFH LTQKDAALIG LDIGTTALKN LCRANGLSNW PYRKIACLDN  240
KFNNNLKKKI TGWSLSKAIQ GVTKAFELRN KKIELYESIM SSMPEQLQAQ TNQGNDEKGL  300
ESYLHITQKD VALIGLGIGT TVLKNLCRAN GLSNWPYRKI ACLDSKFNNN LKKKITLGGG  360
LPKQSSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G08540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.11e-139PREDICTED: uncharacterized protein LOC107304984
TrEMBLA0A0D9XE860.0A0A0D9XE86_9ORYZ; Uncharacterized protein
STRINGLPERR09G08540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212