PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G08870.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GeBP

Protein Properties

Length: 356aa MW: 37751 Da PI: 7.7534

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G08870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	75	1.3e-23	183	251	2	68
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkk 68 +++r+ws+ De+v+L+Gli+f++k+g+ +++did++y ++++++s++vs +ql++K+rrLK+K++ LPERR09G08870.1 183 RPSRVWSQADELVILRGLITFRTKRGVlpCSTQDIDKLYGYIRGQLSATVSVTQLSDKVRRLKQKYQLL 251 679**********************766778*******************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-18	185	253	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAPKRPADEA AAAGSGSDTS DAEADAARGH ASSPSPSKTP PHANPNPKSA AAAAPPSAAG 60 PESPAGSDSD SDADAARGGA RMEVDHPRPR SRSLDANSDS EDSALPVAYD DYADPAASAG 120 AGADSDDGNA SPLPPPRPSH AEAAAIKPIS SRPMDPPRRS TGGASSEPRA KRPRSAAAEH 180 SKRPSRVWSQ ADELVILRGL ITFRTKRGVL PCSTQDIDKL YGYIRGQLSA TVSVTQLSDK 240 VRRLKQKYQL LATLTMANGN GTGVTAVNAS VRGRGEFEKG KDVYPYLWET VEELSSQHPS 300 GAVFKKAFEL LEGSKAQVVE EKLRKFRLTE MRQQLRRMDL MKETLTMVLD ALEMAD

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAPKRPADEA AAAGSGSDTS DAEADAARGH ASSPSPSKTP PHANPNPKSA AAAAPPSAAG  60
PESPAGSDSD SDADAARGGA RMEVDHPRPR SRSLDANSDS EDSALPVAYD DYADPAASAG  120
AGADSDDGNA SPLPPPRPSH AEAAAIKPIS SRPMDPPRRS TGGASSEPRA KRPRSAAAEH  180
SKRPSRVWSQ ADELVILRGL ITFRTKRGVL PCSTQDIDKL YGYIRGQLSA TVSVTQLSDK  240
VRRLKQKYQL LATLTMANGN GTGVTAVNAS VRGRGEFEKG KDVYPYLWET VEELSSQHPS  300
GAVFKKAFEL LEGSKAQVVE EKLRKFRLTE MRQQLRRMDL MKETLTMVLD ALEMAD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G08870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ277138	1e-112	AJ277138.1 Oryza sativa subsp. japonica partial mRNA for putative rice bicoid protein (rb gene).
GenBank	AP005393	1e-112	AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBank	AP005559	1e-112	AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBank	AP014965	1e-112	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-112	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661301.2	2e-62	PREDICTED: uncharacterized protein LOC102704642, partial
Refseq	XP_015611802.1	6e-61	STOREKEEPER protein
TrEMBL	A0A0D9XED4	0.0	A0A0D9XED4_9ORYZ; Uncharacterized protein
STRING	LPERR09G08870.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14280.1	3e-11	DNA-binding storekeeper protein-related