PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G09190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 306aa    MW: 33274.4 Da    PI: 9.4163
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G09190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32301222103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++ +F++g++ ll+
  LPERR09G09190.1  30 FLTKTHQMVEENATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLLS 114
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i+r+k +
  LPERR09G09190.1 115 GIRRRKAT 122
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3525113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3226119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5426119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-2930119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-173053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-178193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAEAVVAVAK QQHKGGGGRG GGGGGGPAPF LTKTHQMVEE NATDEVISWG KEGRSFVVWK  60
PVEFARDLLP LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANGNFRRGEQ GLLSGIRRRK  120
ATTTPQSSKS CGSGGVNVAF PPPLPPLPPA PSATTSSGND RSSSSASSPP RADITSENEQ  180
LRKDNHTLTT ELARARRHCE ELLGFLSRFL DVRQLDLSLL MKEDMRAAAA EAGGGERFEQ  240
EEHGREEKCV KLFGVLLDDT HGAASRKRAR CEEAAASERP IKMIRIREPW VSVPSSGPAR  300
CGGGDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-20301235109Heat shock factor protein 2
5d8l_B2e-20301235109Heat shock factor protein 2
5d8l_D2e-20301235109Heat shock factor protein 2
5d8l_F2e-20301235109Heat shock factor protein 2
5d8l_H2e-20301235109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G09190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614330.0AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence.
GenBankHQ8588290.0HQ858829.1 Oryza sativa Japonica Group isolate UT1328 HSF-BDB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611859.11e-159heat stress transcription factor B-1
SwissprotQ67TP91e-160HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A0D9XEH00.0A0A0D9XEH0_9ORYZ; Uncharacterized protein
STRINGLPERR09G09190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-53heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]