PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 176aa    MW: 20095.7 Da    PI: 8.5207
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.2e-1281135357
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      e +r rr+++NRe+ArrsR RK+ ++ eL+  v  L   N++L +el++    ++
  LPERR09G10020.1  81 EERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCS 135
                      67899******************************************99877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1479143IPR004827Basic-leucine zipper domain
PfamPF001704.6E-1080135IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.55381132IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-1083132No hitNo description
SuperFamilySSF579596.13E-1183132No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
CDDcd147022.12E-1488132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MLHHHYHGEV ASLHCLSPPS LPFSSHYHSN MITMTPTPFH FPAAAVICEP IHELLPVVAA  60
AGNCPAGSGS TDDAYQMAAE EERRRRRMIS NRESARRSRM RKQRQLSELR GQVVHLRDAN  120
RRLLDELNQA MRGCSDIHCE NARFRKERDE LQAKLEHLMQ AQKNNTSPSS PEPREN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083191e-170AK108319.1 Oryza sativa Japonica Group cDNA clone:002-141-G12, full insert sequence.
GenBankAP0061691e-170AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08.
GenBankAP0149651e-170AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612405.11e-104basic leucine zipper 8
TrEMBLA0A0D9XES31e-127A0A0D9XES3_9ORYZ; Uncharacterized protein
STRINGLPERR09G10020.11e-128(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.13e-09basic leucine-zipper 43