PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G10110.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 198aa MW: 21140.4 Da PI: 9.2434

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G10110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.5e-37	37	94	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGg++r+n +++ LPERR09G10110.1 37 AEACPRCESRETKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGASRHNTTTK 94 679**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.82	38	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-32	38	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-17	48	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MQEAAGRRAA PQFAGVDLRR PKGYPPTQAT PAIEAAAEAC PRCESRETKF CYYNNYNTSQ 60 PRHFCKSCRR YWTKGGSLRN VPVGGASRHN TTTKQSSSSS SSVSSPKRSK NNPKRRRVAV 120 SPEPTTPAPP TTAADVAAPT SQEDSATVAG LADGGGKEVV VDASPFEWPS GCDLGPYTYW 180 PTGGVFADTD PALFLNLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	117	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G10110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005759	1e-62	AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05.
GenBank	AP014965	1e-62	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-62	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	KC996733	1e-62	KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576643.1	4e-66	dof zinc finger protein MNB1A
Swissprot	P38564	7e-47	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A0D9XET8	1e-142	A0A0D9XET8_9ORYZ; Uncharacterized protein
STRING	LPERR09G10110.1	1e-143	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	1e-24	DOF zinc finger protein 2

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]