PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 411aa    MW: 42612.7 Da    PI: 9.6734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12341386655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  LPERR09G10800.1 341 SIAERVRRTRISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 386
                      689*********************6....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-15338395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-12339390No hitNo description
Gene3DG3DSA:4.10.280.107.8E-15340396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9341386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-12341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MYGSPVSKDL NQLPSGVNAG VRTPPQMSSP GLLRYRSAPS TLIGEVCGDF LQAATGGGGG  60
GGGVGQQLQL QRPASPPDHA AAAAADTVLA RFLSGHGHGE IRDKPPRPAV AAHFVPEDSA  120
AAMASHQQQQ QQLMYQSHQQ MASAMEGLYR TVSSGGGGAE SAAAAVAGNS LLRQSSSPAG  180
FLNHLTMDNG YGNMLRAGMA GAGVAGGDPR LKGQLSFSSR QGSVMSQISE MGSDELAGGS  240
SSPEAGSNGA GAGGYGGYQW EDPSPPASLH GGNNKRPRGG DDILPRQLSL PASSTKSGGK  300
PPSSAAAASP EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE  360
LVPNMEKQTN TSDMLDLAVD YIKELQKQVK VLKDGRSNCT CSASKQKHFA G
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209021e-140AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.11e-161transcription factor bHLH130
TrEMBLA0A0D9XF260.0A0A0D9XF26_9ORYZ; Uncharacterized protein
STRINGLPERR09G10800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-37bHLH family protein