PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 400aa    MW: 41104.4 Da    PI: 8.3591
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.3e-4275151177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +CqvegC +dls +k y+ rhkvC +h+k p+v+v+gleqrfCqqCsrfh+l efD++k+sCrrrLa+hnerrrk+ 
  LPERR09G10900.1  75 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPTVAVAGLEQRFCQQCSRFHQLPEFDQGKKSCRRRLAGHNERRRKPP 151
                      6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3372137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.68473150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-4074153IPR004333Transcription factor, SBP-box
PfamPF031102.7E-3276149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MATGGSGGGA AGAGDDVHGL KFGKKIYFEQ DAAAAAVESS SSPSGGGGGG GKKGKGVASS  60
SSSASAAAPP PPPPRCQVEG CGVDLSGVKP YYCRHKVCYM HAKEPTVAVA GLEQRFCQQC  120
SRFHQLPEFD QGKKSCRRRL AGHNERRRKP PPAPLSSRYG RLAAAFHATV GPDEPGRSRS  180
FVVDFSYPRV PTSVRDAWPA IQPGDLMSGS IQWQGGHELH PHHSAVVGYG DHHAFSSHGG  240
SAAGAPMLHH PAFELTSGGC LAGVATDSSC ALSLLSTQPW DTTTQSTTSS HNRPPAMSTT  300
ASAFGGGNNP VAPSVMASNY MAASSGWNSS GRGHDGTRNM HPTPHGVALN DVPPGSVHHG  360
HFSGELELAL QGGGPSNRPE TEHGSGGGGG GFNHAMNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29761491184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635610.0AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.10.0squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0570.0SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0D9XF430.0A0A0D9XF43_9ORYZ; Uncharacterized protein
STRINGLPERR09G10900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-43squamosa promoter binding protein-like 9