PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 583aa    MW: 60841.2 Da    PI: 10.6249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-103283447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47
                     W t E++ll++av ++G+g+W+++a +++          +t+ +c++r++++
  LPERR09G10970.1 32 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPSLTPTSCRLRFRQL 83
                     9999*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-62886IPR001005SANT/Myb domain
SuperFamilySSF466891.37E-53086IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-43284IPR009057Homeodomain-like
CDDcd001678.49E-73283No hitNo description
PfamPF002496.8E-103283IPR001005SANT/Myb domain
PROSITE profilePS500906.4813284IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAADGSDGTD ASPGETTATA SASASAGGGE IWGTLEELLL ACAVSRHGTG SWDSVAMEVQ  60
TRSPLAARPS LTPTSCRLRF RQLHRRFSLS SAADDEAEAE EGEGPDASAA NAWMDELRRL  120
RVAELRREVE RCDLSIGTLQ TKVKRLREER ERGIDGDGKP ETSPSPANDG DERVSSEEHG  180
RSCRESNSTD LKPPTRHHAG VKAEEEEGNA AAAKQEVSGE SAAASKESSD LRSSASLCHR  240
RREEEADGEE ASAPPRRPTV AGDPSPLAAL LDAFAARFGP LLERLHESQR RVPRHDQAPR  300
GHRRGAAASG LRGGGRRXXX XXAAPSPAAE DVRRVEVVGS LIEKGGKPLI VCRKRSSIAK  360
AAAAAAAAVA AKKEEIVAAE KGEIAEEEQE GSDDDDVSGG EKKVAVVAAA TKDKAWGLRT  420
KKGRGGGRNS GAGSRKLSKL SDATETATEK ATKKSAAAAA AAEAAAGTPA KKRNAVDFLK  480
RLNQNSSPSK KKNGSTMGTR KRGAATAAAS PETAQKTRKG LGGRKEGGRG GGRKGGKAAT  540
PKRSVGRPPS KRGAAAPATP PPSKRAKVSR SEKTTSSKRG GRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083351e-101AK108335.1 Oryza sativa Japonica Group cDNA clone:002-142-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XF500.0A0A0D9XF50_9ORYZ; Uncharacterized protein
STRINGLPERR09G10970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-22DNA-binding bromodomain-containing protein