PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G11330.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 346aa MW: 38470.9 Da PI: 9.2815

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G11330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.4	4.8e-56	17	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ LPERR09G11330.1 17 LPPGFRFHPTDEELITYYLRQKIADGSFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 109 79***********************999.89***********99999************************************9 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + elvg+kktLvfykgrap+gekt+Wvmheyrl LPERR09G11330.1 110 GqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 147 766666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-64	14	168	IPR003441	NAC domain
PROSITE profile	PS51005	60.935	17	168	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	18	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGMEGSGGGS EKKEESLPPG FRFHPTDEEL ITYYLRQKIA DGSFTARAIA EVDLNKCEPW 60 DLPEKAKMGE KEWYFFSLRD RKYPTGVRTN RATNAGYWKT TGKDKEIFTG QPPATPELVG 120 MKKTLVFYKG RAPRGEKTNW VMHEYRLHSK SIPKSNKDEW VVCRVFAKTA GVKKYPSNNV 180 HSRSHHPYTL DMVPPLLPAL LQQDPFGRGH HPYMTPVDMA ELSRFARGTP GLHPHIQPHP 240 GYINPAGPFT LSGLNLNLGS SPAMPPPPPQ SILQTMSMSM PMNQPSTANQ VMATEQMVPG 300 LGNGVIPPGA DGGFTTDAVV GGTSIRYQNL DVEQLVERYW PGSYQM

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGMEGSGGGS EKKEESLPPG FRFHPTDEEL ITYYLRQKIA DGSFTARAIA EVDLNKCEPW  60
DLPEKAKMGE KEWYFFSLRD RKYPTGVRTN RATNAGYWKT TGKDKEIFTG QPPATPELVG  120
MKKTLVFYKG RAPRGEKTNW VMHEYRLHSK SIPKSNKDEW VVCRVFAKTA GVKKYPSNNV  180
HSRSHHPYTL DMVPPLLPAL LQQDPFGRGH HPYMTPVDMA ELSRFARGTP GLHPHIQPHP  240
GYINPAGPFT LSGLNLNLGS SPAMPPPPPQ SILQTMSMSM PMNQPSTANQ VMATEQMVPG  300
LGNGVIPPGA DGGFTTDAVV GGTSIRYQNL DVEQLVERYW PGSYQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	16	174	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	16	174	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	16	174	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	16	174	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	16	174	19	174	NAC domain-containing protein 19
3swm_B	2e-55	16	174	19	174	NAC domain-containing protein 19
3swm_C	2e-55	16	174	19	174	NAC domain-containing protein 19
3swm_D	2e-55	16	174	19	174	NAC domain-containing protein 19
3swp_A	2e-55	16	174	19	174	NAC domain-containing protein 19
3swp_B	2e-55	16	174	19	174	NAC domain-containing protein 19
3swp_C	2e-55	16	174	19	174	NAC domain-containing protein 19
3swp_D	2e-55	16	174	19	174	NAC domain-containing protein 19
4dul_A	1e-55	16	174	16	171	NAC domain-containing protein 19
4dul_B	1e-55	16	174	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G11330.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102511	0.0	AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660793.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	4e-84	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D9XF88	0.0	A0A0D9XF88_9ORYZ; Uncharacterized protein
STRING	LPERR09G11330.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	2e-90	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]