PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G11920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 450aa    MW: 47760 Da    PI: 8.1692
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G11920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-40111187278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC+adls+ ++yhrrhkvCe hsk+pvv+vsg+e rfCqqCsrfh l efDe krsCr+rL++hn+rrrk+qa
  LPERR09G11920.1 111 CAVDGCKADLSKYRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEIKRSCRKRLDGHNRRRRKPQA 187
                      **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-35104172IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.752108185IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-38109190IPR004333Transcription factor, SBP-box
PfamPF031102.3E-31111184IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDWDLKMPVS WDLTDLDHDA VPATPATNTT TALGIASAAV APAGRPECSV DLKLGGLGEF  60
GAAAKGPAVV PPSNTSPASP AATAVARVPT AAASPARRPR GVSGAGQCPS CAVDGCKADL  120
SKYRDYHRRH KVCEPHSKTP VVVVSGREMR FCQQCSRFHL LGEFDEIKRS CRKRLDGHNR  180
RRRKPQADSM SASFMTSQQG TRFASFTPPR PEPSWSGIIK SEETPYYSHH HHHHHHQIMS  240
SGKQHFVGSP SRTTTTTTTA TFSSSSSKEA AGRRFPFLHD GDQISLLKTT TAVVSPVPAT  300
AIESSSSNNN KIFSDGQLGH THHQILDSDC ALSLLSSPAN SSTVDVAGRI NLHHHPPHHP  360
SPAAIPIAQS LVPNLQQQFG GGGGSSPWFA SGGGGGGFNC PTSVESEQQQ VNTAVVPGSN  420
ENEMNYHGIF HVAGEGSSDG TSPSIPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-29101184184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167184KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G11920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094694e-68AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610874.11e-163squamosa promoter-binding-like protein 18 isoform X2
SwissprotQ0J0K11e-164SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A0D9XFE90.0A0A0D9XFE9_9ORYZ; Uncharacterized protein
STRINGLPERR09G11920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-40SBP family protein