PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G12100.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 249aa MW: 26780.4 Da PI: 10.4519

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G12100.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.2	2.8e-35	9	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yL++++ +++l++ vi+++ + ++Pw Lp a+e e yfFs r++++ +g ++r++ sgyWkatg++k LPERR09G12100.2 9 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDLhHAAILDPWLLP---GAGEGEAYFFSFRRSAAMgggRGGGRRRKAGSGYWKATGTEK 98 79**************************.889999677888**...447789**9999984444445778999******* PP NAM 91 evlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ + +++lvg+k+tLvf +++ p +t Wvmheyrl LPERR09G12100.2 99 PVFLRgfgcgggkqQQQLVGVKTTLVFVRAKPPC--RTGWVMHEYRL 143 *****998777777******666655..*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-43	4	175	IPR003441	NAC domain
PROSITE profile	PS51005	43.128	9	175	IPR003441	NAC domain
Pfam	PF02365	5.6E-24	10	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MATAARQQLP PGFRFHPTDE ELVVQYLRRR ALSRPLPAAV IPDLHHAAIL DPWLLPGAGE 60 GEAYFFSFRR SAAMGGGRGG GRRRKAGSGY WKATGTEKPV FLRGFGCGGG KQQQQLVGVK 120 TTLVFVRAKP PCRTGWVMHE YRLAAAAAIA GLKKGGDHSC MSQTGEWVVC RIFLKNNRSS 180 SKRRLTDVDS QTPVTGVHDG VLGHRRQPSP SPSPSSSSCV TVEVSDEEEA EVSSGSINSA 240 PTVASQREA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	9	177	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	9	177	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	9	177	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	9	177	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	9	177	20	170	NAC domain-containing protein 19
3swm_B	1e-32	9	177	20	170	NAC domain-containing protein 19
3swm_C	1e-32	9	177	20	170	NAC domain-containing protein 19
3swm_D	1e-32	9	177	20	170	NAC domain-containing protein 19
3swp_A	1e-32	9	177	20	170	NAC domain-containing protein 19
3swp_B	1e-32	9	177	20	170	NAC domain-containing protein 19
3swp_C	1e-32	9	177	20	170	NAC domain-containing protein 19
3swp_D	1e-32	9	177	20	170	NAC domain-containing protein 19
4dul_A	1e-32	9	177	17	167	NAC domain-containing protein 19
4dul_B	1e-32	9	177	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G12100.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651404.1	1e-93	NAC domain-containing protein 83
Swissprot	Q9FY93	1e-45	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0D9XFH3	0.0	A0A0D9XFH3_9ORYZ; Uncharacterized protein
STRING	OMERI09G11680.1	1e-110	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-24	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]