PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 300aa    MW: 33040 Da    PI: 7.2125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09117164455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  LPERR09G12170.1 117 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 164
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-17111180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.66E-11111168No hitNo description
Gene3DG3DSA:4.10.280.109.7E-17113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLTNGFL FCHGHGASTT ASAIPEDASL ETSSAVLDTS PKGTASVDKK  60
RKPREEDSAS LNSAHSKEAK ENSRKRGGKK HNMDQMEEEA PQGFIHVRAR RGQATDSHSL  120
AERVRRERIS ERMRMLQALV PGCDKVTGKA LILDEIINYV QSLQNQVEFL SMRIASLSPV  180
LYGFGIDSDS FSDHSQKIEG MFHEAVAIPA SVLNRGSPAQ SHSQAIMDTS NSSPTPYSIQ  240
VQGGNNSLSQ VSIPKHCSQL RLHCVHTFQD NGSYIMQTVG EPRQELFNQL VLNNYMCSFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G12170.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660828.10.0PREDICTED: transcription factor bHLH76-like
TrEMBLA0A0D9XFI20.0A0A0D9XFI2_9ORYZ; Uncharacterized protein
STRINGLPERR09G12170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-39bHLH family protein