PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 233aa    MW: 25167.8 Da    PI: 4.9514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-174696153
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                     + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ta+ Aa+a++aa+++l
  LPERR09G12950.1 46 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTADAAARAHDAAMLAL 96
                     579******************9...6445**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-134696IPR001471AP2/ERF domain
PROSITE profilePS5103219.57247111IPR001471AP2/ERF domain
SMARTSM003802.6E-1447117IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1547110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2447113IPR001471AP2/ERF domain
PRINTSPR003679.7E-54859IPR001471AP2/ERF domain
PRINTSPR003679.7E-57288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCGIKREMSG ESPCSSSPEQ QQHQTVWTSP PKRPAGRTKF RETRHPVFRG VRRRGNAGRW  60
VCEVRVPGRR GCRLWLGTFD TADAAARAHD AAMLALAAGG DSGETCCLNF ADSAWLLAVP  120
SSYRSLADVR HAVAEAVEDF LQRRHHRDDA MSPSSAHTDG DESAATDTDG DDSSSFSSPA  180
NDMAFELDDV LGDMGWDLYY ASLAQGMLME PPAVAAAAAF GDGNVADVPL WSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G12950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009701e-126AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds.
GenBankAF4944221e-126AF494422.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds.
GenBankAK1055991e-126AK105599.1 Oryza sativa Japonica Group cDNA clone:001-200-A04, full insert sequence.
GenBankAK2876921e-126AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence.
GenBankAP0068591e-126AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
GenBankAP0149651e-126AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-126CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankJN5611511e-126JN561151.1 Oryza sativa Indica Group DREB1A (DREB1A) gene, complete cds.
GenBankJQ8859551e-126JQ885955.1 Oryza sativa isolate UR14 DRE-binding factor 1A (DREB1A) gene, complete cds.
GenBankJQ8859561e-126JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.11e-108dehydration-responsive element-binding protein 1A
SwissprotA2Z3891e-109DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0D9XFT71e-170A0A0D9XFT7_9ORYZ; Uncharacterized protein
STRINGLPERR09G12950.11e-170(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-28C-repeat/DRE binding factor 2