PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G13150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family DBB
Protein Properties Length: 230aa    MW: 25335.5 Da    PI: 6.1584
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G13150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-08333434
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+ +e+ ++ lfC  ++  lC++C ++ H
  LPERR09G13150.1  3 TICDVCESAPAVLFCAADEAALCRSCDEKVH 33
                     68**************************998 PP
2zf-B_box27.75.7e-095291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  LPERR09G13150.1 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                     6799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.324147IPR000315B-box-type zinc finger
CDDcd000211.29E-7345No hitNo description
PfamPF006431.2E-6341IPR000315B-box-type zinc finger
SMARTSM003364.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.5275196IPR000315B-box-type zinc finger
PfamPF006435.3E-75291IPR000315B-box-type zinc finger
CDDcd000211.66E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP NKVQRCDICE  60
NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQKD  120
PENRRDQKTA PHSVTKEQMT NHHNNVADDP ASDGNCDDQG NIDSKMIDLN MRPVRTHGQG  180
SNSQTQGVDL TVNNHDSPGV VPTSLRERGL ALASQWLGQN MCYCGDLFCG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G13150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221720.0AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651327.11e-143B-box zinc finger protein 18
SwissprotC0SVM51e-72BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D9XFW51e-171A0A0D9XFW5_9ORYZ; Uncharacterized protein
STRINGLPERR09G13150.11e-172(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-75DBB family protein