PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G13310.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 775aa    MW: 83256.8 Da    PI: 6.6226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G13310.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-066897031226
                      TS--TTTTT-SS-SS CS
          zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                       G+C+ G++C+F+H+
  LPERR09G13310.4 689 KGYCRKGESCRFSHS 703
                      5*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF552771.83E-18151214IPR003169GYF domain
PROSITE profilePS5082915.411162216IPR003169GYF domain
CDDcd000727.32E-14162215No hitNo description
SMARTSM004449.5E-18163218IPR003169GYF domain
Gene3DG3DSA:3.30.1490.407.7E-18164215IPR003169GYF domain
PfamPF022134.5E-14164208IPR003169GYF domain
PROSITE profilePS5010314.155677705IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5680705IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4682703IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MVTKKKLQLL STPEERVRRL NEDPEVHADH TMDPDYESPE EQEEDTERSS FNKSRGSFFR  60
KDGNPVSPGK GEGRSPAHRD SKANWESNRN TWGESSTHIE SPLGRRPSFS SHSESKTDSP  120
AHTVKVAGNA PHGLSGVSSE ITGSNAGSGG TQSSQSVINE SEKIWQYVDP TGKIQGPFSI  180
LQLRKWNSSG YFPPNLKIWK STEKQDDSIL LTDALLGKFE KDLPPWEPPV GSSSNVDTRP  240
RSDSRFEEST KSGEQPSKSA VLNSSQSLSG RVGQINDTAN LGSATIQSSA QVYYGMQNSQ  300
AAYAVQQSLT GSWNTSTSQF GTTINPMTLS QPSMGNFSVG QTAAVGGQLT SVQGPATISA  360
EVVNSQSQPQ NQIASLSQSD GRLADGNDSK LGADASHERT RPLGEGLGLA AAQPGAVQSN  420
TQQHEEARSH LQNAASNSVN PSQLMSTPSA QAVQPSPTTM AGGDTQNSGW TQLASTSGQS  480
QGAANMPWGT TIQGNANMGW GMMGQNNMNM SWGGPAQSAT GYNMALTMPA QPNAVSNMGW  540
VTPNPGNTNM NMMWAATQGQ GTPNAAAMMG TQMQGVAMAP WGAVTQGNTN SYSGWGAQVG  600
NLNQNAGWGA PMQSNAGPST GNGTSQGNNN MNWNSPSGNT NWNNQQRDNG GRHSGHGGDS  660
GGRSWRSQSG GDGGSWGNRR GVCFSMLEKG YCRKGESCRF SHSIPNDGYP SRNDRHFDRQ  720
NSGNERRYDR QNDRTDRQFD RQSSGNERHD DMDNSRDSDR HDERQTDRSQ SRERQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G13310.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055670.0AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07.
GenBankAP0056820.0AP005682.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1531_B07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611529.10.0zinc finger CCCH domain-containing protein 19
TrEMBLA0A0D9XFY40.0A0A0D9XFY4_9ORYZ; Uncharacterized protein
STRINGLPERR09G13310.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.17e-35nucleic acid binding;zinc ion binding;DNA binding