PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G16040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 169aa    MW: 18583.8 Da    PI: 4.9858
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G16040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.71.2e-1722114695
            NF-YB   6 rflPianvsrimkkvlPanak...iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      ++lP a v r++k+ l a +    + +da     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ ++
  LPERR09G16040.1  22 EELPKAIVRRLVKEKLAAGGAeviVNRDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNKNA 114
                      679***********9987553233899**************************************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-3320148IPR009072Histone-fold
PfamPF008081.1E-112390IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.8E-2724146IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAGEKAEKGS QPQPAQAAAE VEELPKAIVR RLVKEKLAAG GAEVIVNRDA MSAFAESARI  60
FIHYLSATAN DMCKESKRQT INADDVLKAL DEMEFPEFVE PLNTSLQEFR NKNAARRSGT  120
TQKKAEKKRK IDKESEPQEQ NDAADDANET MAGVTKPWII DGHGNDNPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115128RRSGTTQKKAEKKR
2121129QKKAEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G16040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426341e-143AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661566.11e-83PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLA0A0D9XGZ41e-120A0A0D9XGZ4_9ORYZ; Uncharacterized protein
STRINGLPERR09G16040.11e-121(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-35nuclear factor Y, subunit B11