PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G16240.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 647aa    MW: 70553.4 Da    PI: 6.2954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G16240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012131152223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      kC++C++ F ++ n++rH r+H
  LPERR09G16240.2 131 KCTKCSREFCSSINYRRHTRVH 152
                      7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.619130152IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MTKKPLGLLP FPSFFGKKGR IGTIAGESRR AAAAEGLGSG EFGGKREERE EEVAARERET  60
TGSPHLAILL LLLLLVRVRF ASSSLACPPQ PPGSQSRSES NPKAMPHARS SPVADLPGWP  120
LFSPPKLQLQ KCTKCSREFC SSINYRRHTR VHRRTLQIEK DFLKNRDNIA AFWDRLTLDQ  180
AKTILSLADV DIEGVSGPSI LAALTTWTCK PGYASLPNAY ARAGNQLLDL IETTPSRLPV  240
SSNELFSMLD EASENTFLCT NPTASIKKFI FNGEADKVAT ELKNAVACTS YMLEQKLVEA  300
WSADKAAEAL RCQKLLVEEE EAAQKKQAEL IERKRTKKLR QKVQRLKDLK DEDAIDHLPE  360
TLDCAADSSG TLSLKATLDP GLYEQEDPQY LSLPTPVASE DNNSFVDLSV ENGIPDPGHE  420
VDSGVVLSQQ AFSRHRLGRK ENLAQNSFAS GSAIGSKHAA LARHSHYRGT NVSAVSNKTK  480
TWAWKARTEI EEHIAKDELN IDDGQVIGLN KKSRVLIGSI SVAIEDNSEC LQDSKESPTA  540
TPASQLNIGN NPVTKMVQPI SDGEDGNGHT VHNDVVVNIT PTEENDSSSS VMPDGSSRSS  600
CCNEGLAEDG VLRGTMFSSK EAAAFLSQRW KEAITSDHVK LVLCPDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331338ERKRTKKL
2336346KKLRQKVQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G16240.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020350.0AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611822.10.0uncharacterized protein LOC4347911
RefseqXP_015611823.10.0uncharacterized protein LOC4347911
TrEMBLA0A0D9XH180.0A0A0D9XH18_9ORYZ; Uncharacterized protein
STRINGLPERR09G16240.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-82C2H2-like zinc finger protein