PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G00150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 247aa    MW: 27078.6 Da    PI: 7.829
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G00150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18102156256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  LPERR10G00150.1 102 RKKLRLSKDQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 156
                      788899***********************************************98 PP
2HD-ZIP_I/II1253.4e-40102190190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rlsk+q++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  LPERR10G00150.1 102 RKKLRLSKDQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 190
                      69*************************************************************************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1886159IPR009057Homeodomain-like
PROSITE profilePS5007116.87698158IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-17100161IPR009057Homeodomain-like
SMARTSM003892.2E-15100162IPR001356Homeobox domain
PfamPF000462.3E-15102156IPR001356Homeobox domain
CDDcd000867.51E-16102159No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PfamPF021832.0E-10158191IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-20158201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAQDKELGLA LGLSLASGGG GGHHEHELVT TRSEPPPLSL TLSLPSDSGL TTPPPSVRTT  60
QVKRELQQHG EEDEYYDGGE RALYSVASSV AAADDDDGCN SRKKLRLSKD QSALLEDRFK  120
EHSTLNPKQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCELLKRC CETLTEENRR  180
LHRELQQLRA LSHPHAATTA GFFMAPLPAA TLTICPSCEL LAGDAAPADR TKKSAHFFGP  240
FAKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100106SRKKLRL
2150158RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-98homeobox-leucine zipper protein HOX15
SwissprotQ7G7374e-87HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA0A0D9XH741e-180A0A0D9XH74_9ORYZ; Uncharacterized protein
STRINGLPERR10G00150.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-61homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]