PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G00860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 1501aa    MW: 170618 Da    PI: 8.852
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G00860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like44.92.6e-14534585355
          G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      r +Wtp  HerF++++ +  G  kA P+++++lm+v+gL++e ++ HL kY l
  LPERR10G00860.1 534 RFVWTPAFHERFINVILRQ-GLYKADPQKVMDLMDVEGLSREIIAIHLKKYHL 585
                      899***************9.9******************************76 PP
2Response_reg33.71.9e-121462641110
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHH.HHHT....TT...SEEEEEESTTTHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkei.reee....pk...lpiivvtahgeee 84 
                      vl+vd +++++  l q+l    + +v+++  g eal++l  ++ ++Dl+l    mp+m+ + l+++   +      ++    +  v+++ ++ +
  LPERR10G00860.1 146 VLVVDNDESNLTSLSQMLIGFLC-HVTTCLRGAEALAMLvdRRDNFDLVLSEAHMPDMNMFILTEHVgLKMYvpvaDTaniKKMAVMSDDSSTN 238
                      89*********************.***************554555*************9999999996555576652233356789999999** PP

                      HHHHHHHTTESEEEESS--HHHHHHH CS
     Response_reg  85 dalealkaGakdflsKpfdpeelvka 110
                        ++alk G   +l+Kp+++eel + 
  LPERR10G00860.1 239 SFVNALKCGSLSYLVKPIAEEELKTL 264
                      **********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.7E-21142273No hitNo description
SuperFamilySSF521725.83E-20143283IPR011006CheY-like superfamily
SMARTSM004482.5E-13144265IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.966145269IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-8146265IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.81E-13147265No hitNo description
Gene3DG3DSA:1.10.10.602.6E-14530589IPR009057Homeodomain-like
SuperFamilySSF466891.16E-7532589IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-9534585IPR006447Myb domain, plants
SuperFamilySSF525401.87E-49653939IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.4E-4689791IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.1E-37696965IPR002182NB-ARC
PRINTSPR003642.3E-10700715No hitNo description
PRINTSPR003642.3E-10775789No hitNo description
PRINTSPR003642.3E-10876890No hitNo description
SuperFamilySSF520582.55E-399991199IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.5E-1710331180IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.3E-1011011117No hitNo description
Gene3DG3DSA:3.80.10.102.1E-1712921487IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.55E-3913021485IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1501 aa     Download sequence    Send to blast
MKKEKHADIK VKEEKEERKP NEVLKHAPPM LPYQSGKLLP QKRSRSETIS GSNPHLYAPQ  60
HSPTDACKKQ KSEVYYLPLL SPSALSEPSC FSMDRGLFPF PVMGSKGAEG RDDEQGLGSS  120
QEFGDLPFLD RKMNTMPEGF LMRMRVLVVD NDESNLTSLS QMLIGFLCHV TTCLRGAEAL  180
AMLVDRRDNF DLVLSEAHMP DMNMFILTEH VGLKMYVPVA DTANIKKMAV MSDDSSTNSF  240
VNALKCGSLS YLVKPIAEEE LKTLIFHVSR IKLCNNYNEL VQSTSLYHFG QRRQVSNPRM  300
GKAQQKEEIS GYTISISSVI LAVLFLTKLR RFETRFTRVK EETSGSKSNS YIEFVQSTST  360
YQSGQSRQLS NPHKCKTEWK VPSRIKSPNM KKFSSAILAI IFILRLTFLT RLDRLKEVSS  420
RQCKAFSTAF LAILFLAKLR RLKISKSETR FKRVIIFGST SRNDNRLVRP MPTSIYFSGQ  480
SRQVGIPHLV KARWRILFCV AIFVAQLRGL KMSRSKTRLT RVKEEEISGS KTLRFVWTPA  540
FHERFINVIL RQGLYKADPQ KVMDLMDVEG LSREIIAIHL KKYHLSLKRL AHIYHLSLKR  600
LAHIPLSKAV SDIHGDTRPA GFWIQDINKA KLLQEVRDSV YYVNEHQFVT ESIRLQSNMV  660
PEEYMTFSYQ KEFNKLMELL GVSPRIAINR NKAGPENVSV LPLVGHGGVG KTTLALQIFN  720
DKNVLDYFDR RCWISASEVF HEQDLIKKFI RAVAECEMES DDLGCIQRVL TGGIVDQSKR  780
FLFVVDNIQE CACDGISAGW MGSLSILQHA KFGSMVLMTT RSMKVANTFG TMNAFLLGGF  840
PEVTLWKFLK ICAFGSDTFI SNHFLEDIGR RIVEKLNGIP FAAKILGRLL SLHLSSEFWS  900
NILRSELWEW PEEETGVSPY LLLSYQYLPS HLKQCFSFCS TYPKGYKFDK DILVDCWEAV  960
GLVVAHKKIP IQDVGGSYFD QLVNRSFFQK IPSSSKYVMN DMLHDMALVV AKNECIMIRD  1020
KTDLLMVHPN ILHLSVHSKS CLDLGSLESL SRYNKLRSLV CNGVDSSIIT RAAEVWFHKL  1080
REVRMLSFDC CQLKELPESI GNLKYLRYLN ISSCTFDKLP SSFWCLSKLE ILYAHGCTFQ  1140
HLPKDITKLT NLRRVKLNDS LTNQFRYMPE VGKLQFLQEL PYFDVGNEHG RYIGELKNMN  1200
HVVGSLEISG LVNVMSKDEA AEAQLHQKNY LDTLILSWDE SVTTYTKQLI TGLALEIIEG  1260
LCPSYYLKHL GIKCYKGFEL HPSWFNKEKL HCLSSISIYS CPNLVSLPFQ STASSCNRSI  1320
TRFPWLTKLS ISRCRKLTSL AKFLESDCFP AMKSIHIEKC ESLVSLPAQG FAGFAHLEEV  1380
EFSECWNLNW PPDLVFPSSL KELKLEACGD ISESTFSCLH SLCALTTLKL QFCHLVKSIP  1440
AQAWSSLVSL ENLTIFYCKG LQSVGGSEAI AKVENVDISD CPCLQDLVQP FRKGSNAQQY  1500
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-35609137382841Disease resistance RPP13-like protein 4
6j5t_F3e-35609137382841Disease resistance RPP13-like protein 4
6j5t_G3e-35609137382841Disease resistance RPP13-like protein 4
6j5t_L3e-35609137382841Disease resistance RPP13-like protein 4
6j5t_O3e-35609137382841Disease resistance RPP13-like protein 4
6j5u_A3e-35609137382841Disease resistance RPP13-like protein 4
6j5v_A3e-35609137382841Disease resistance RPP13-like protein 4
6j5w_A3e-35609137382841Disease resistance RPP13-like protein 4
6j6i_C3e-35609137382841Disease resistance RPP13-like protein 4
6j6i_F3e-35609137382841Disease resistance RPP13-like protein 4
6j6i_G3e-35609137382841Disease resistance RPP13-like protein 4
6j6i_L3e-35609137382841Disease resistance RPP13-like protein 4
6j6i_O3e-35609137382841Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G00860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XHG70.0A0A0D9XHG7_9ORYZ; Uncharacterized protein
STRINGLPERR10G00860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1409969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-22response regulator 2