PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G04210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 252aa    MW: 28342.6 Da    PI: 6.9036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G04210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.34.7e-2156117259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       Dg+ WrKYG K++k+s fpr YYrC+++   +C+++k v++++  dp +  +tY  +H+++
  LPERR10G04210.1  56 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQENeADPPLYRVTYIHQHTCN 117
                      7***************************99999*******9865269*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.72E-2251117IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-2254117IPR003657WRKY domain
SMARTSM007742.2E-3455118IPR003657WRKY domain
PROSITE profilePS5081115.15856119IPR003657WRKY domain
PfamPF031066.2E-2457116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MATSRHLLQT MQFTESASRS PRPGGALGPS SPFSSRKPRL QEGHPTCVNL TPIPHTDGHL  60
WRKYGEKKIK NSSFPRLYYR CSYRDDRNCM ATKVVQQENE ADPPLYRVTY IHQHTCNSSL  120
PAPTPADVFA EPPPPTKSEH PVLFRFSSTG RHTANNADPA LHHHQQQPPT TAEAAQAPEY  180
IRSGAPARRL SMFRAVVEGL RQMRSLVPPP SAMVDDGWDA FSAFDLDTCE FSLDDELPSG  240
DYDMYFQDNM QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-15571161068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G04210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997741e-41AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149661e-41AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-41CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.21e-119probable WRKY transcription factor 32
TrEMBLA0A0D9XIM50.0A0A0D9XIM5_9ORYZ; Uncharacterized protein
STRINGLPERR10G04210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-19WRKY DNA-binding protein 62