PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G04870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 392aa    MW: 43522.1 Da    PI: 4.4078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G04870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.8e-126211969128
              NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g+++   t++gyWk+  + + + + +++ vg+k tL  y+g+ap+g++t Wvm+ey +
  LPERR10G04870.1  62 MNGENTIVETQTGYWKSVDTVR-IPT-STSIVGVKVTLDHYEGQAPSGKRTGWVMNEYLV 119
                      3566677789******987754.555.5889***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4911140IPR003441NAC domain
SuperFamilySSF1019417.59E-1918140IPR003441NAC domain
PfamPF023654.0E-620117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSPSIPGLAL LNFSINNSWS DVELVRFLAE RKAADSLPEN VMVGMDFSLL EPRNSDDQHS  60
PMNGENTIVE TQTGYWKSVD TVRIPTSTSI VGVKVTLDHY EGQAPSGKRT GWVMNEYLVE  120
QNDEANLPQD YKNLCTIFFQ GDKKVNAGDK QISLDANVPS ERQESYLQYL AELEEQNVAS  180
NPQAVSENEK NVSSSKGRDR QKTIAADDQS VNYSSSSEGY IELNDLLSSD ASASTSEYSS  240
RRTVISEDYF DSDAFLREIM KDHKTNDEEH RDSKLSIAAP SKSDRVVISP PEQGFVNNLD  300
SHATIAGDSP QKSVQSDKGQ IFTDSCFNSV KSEMRMAVVS DYHQILSFVN FYCTIFCDSH  360
TLIKVLFVVV NLGLAFSTRV IDNGGWGSSF PM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G04870.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661712.21e-167PREDICTED: NAC domain-containing protein 83-like isoform X1
RefseqXP_015697473.11e-168PREDICTED: NAC domain-containing protein 83-like isoform X2
TrEMBLA0A0D9XIV90.0A0A0D9XIV9_9ORYZ; Uncharacterized protein
STRINGLPERR10G04870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-13NAC domain containing protein 2