PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G05960.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ERF

Protein Properties

Length: 180aa MW: 19307.6 Da PI: 4.7869

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G05960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	8.1e-17	63	112	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr + +g+W+AeIrdp+ r r++lg+f taeeAa a++ +++++g LPERR10G05960.1 63 RFRGVRKRA-WGKWAAEIRDPV----RgVRVWLGTFATAEEAAMAYDVEARRIRG 112 69**887.******63....56**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-25	63	116	IPR001471	AP2/ERF domain
Pfam	PF00847	3.1E-10	63	112	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-25	63	123	IPR001471	AP2/ERF domain
CDD	cd00018	5.72E-23	63	112	No hit	No description
PROSITE profile	PS51032	20.798	63	121	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	64	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.4E-18	64	115	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-10	86	102	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MCGGSILSDL IPVAKNKRPR RSDAAADDFE AAFEEFDAGD SSDEVGIILP PPRPIRRQGE 60 RVRFRGVRKR AWGKWAAEIR DPVRGVRVWL GTFATAEEAA MAYDVEARRI RGKKAKPAAA 120 AAEVFDTYDI DGGLASYFAD AAGSGYESLE SLFAGGGGGD AAEQWPVGLW SFAGDGSFCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-16	64	115	6	58	ATERF1
3gcc_A	8e-16	64	115	6	58	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G05960.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061047	6e-40	AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBank	AK067060	6e-40	AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBank	AK109360	6e-40	AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
GenBank	AP004308	6e-40	AP004308.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0552F09.
GenBank	AP004988	6e-40	AP004988.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1056G08.
GenBank	AP014963	6e-40	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	6e-40	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686748.1	2e-31	PREDICTED: ethylene-responsive transcription factor 1-like isoform X4
Swissprot	P42736	7e-28	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	A0A0D9XJ91	1e-123	A0A0D9XJ91_9ORYZ; Uncharacterized protein
STRING	LPERR10G05960.1	1e-124	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1039	38	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	9e-21	ethylene-responsive element binding protein

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]