PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G05970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 128aa    MW: 14518 Da    PI: 9.4454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G05970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.78.1e-102670653
              AP2  6 VrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53
                     V+w   +g+W+AeIrd +     r  +++l++f t e  a+a++aa++++
  LPERR10G05970.1 26 VSWQWGNGKWAAEIRDpV-----RsVNIWLNTFATNECIARAYDAAARRM 70
                     56666689********44.....56**********99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.3531681IPR001471AP2/ERF domain
SMARTSM003801.2E-42985IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-93073IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-153176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MMTRMGWFFY PTAIVGHKWM CPSTPVSWQW GNGKWAAEIR DPVRSVNIWL NTFATNECIA  60
RAYDAAARRM CQGRSQLLHR DAYTPVLLSP LQQALAIIVR CQRGVLVVII CWTSVLWEHL  120
GSPGGITN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G05970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XJ923e-90A0A0D9XJ92_9ORYZ; Uncharacterized protein
STRINGLPERR10G05970.14e-91(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-11ERF family protein