PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 126aa    MW: 14192.8 Da    PI: 8.7521
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA76.93.9e-241874158
        CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                     dep+YVNaKQy++Il+RRq+R++l +e+k+ ++ rk++l  SR+k+A+ R+Rg+gGrF
  LPERR10G06370.1 18 DEPIYVNAKQYHAILRRRQQRKNLGSEDKV-AAIRKRMLTASRKKQAKLRRRGKGGRF 74
                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.1E-201677IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.7171777IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-181974IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-142042IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-145174IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGMEHTSMLP LPTEHSDDEP IYVNAKQYHA ILRRRQQRKN LGSEDKVAAI RKRMLTASRK  60
KQAKLRRRGK GGRFISTEDP FEGSVDDQSS ENRGSISPCP SETSSNVNII TGDELSLDHD  120
HNSCNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-151898277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06370.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697306.13e-51PREDICTED: nuclear transcription factor Y subunit alpha-like
SwissprotQ93ZH26e-17NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D9XJE13e-89A0A0D9XJE1_9ORYZ; Uncharacterized protein
STRINGLPERR10G06370.15e-90(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174681010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-19nuclear factor Y, subunit A3