PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G07370.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 433aa MW: 47505.2 Da PI: 7.9687

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G07370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H LPERR10G07370.1 82 FICEVCNKGFQRDQNLQLHRRGH 104 89*******************88 PP
2	zf-C2H2	12.1	0.0006	176	198	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ s+ k H +++ LPERR10G07370.1 176 WRCERCGKRYAVCSDWKAHVKNC 198 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.1E-6	81	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.02E-8	81	104	No hit	No description
SMART	SM00355	0.026	82	104	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.866	82	104	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.0E-5	82	104	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2
SMART	SM00355	81	141	171	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.8E-4	164	196	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.02E-8	171	196	No hit	No description
SMART	SM00355	250	176	196	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MLLSDLSSDQ ESNSQGTSHN HMVLSPDLFL PSMATILHLP PVITLPPEEP KTKKKRSLPG 60 NPDPEAEVIA LSPRALVATN RFICEVCNKG FQRDQNLQLH RRGHNLPWKL SSSRQKQNQN 120 QNQQQQPASA AAAASSRKRV YVCPEATCVH HDPARALGDL TGIKKHYSRK HGEKRWRCER 180 CGKRYAVCSD WKAHVKNCGT REYRCDCGIL FSRKDSLLTH RAFCDALAEE SARILAAAAA 240 NNNSSSITTC NNISSIISHN NNINSSCSNN NNLLITTTTS SSSPPLFLPF STPAVENPNP 300 TNPLLFLQQH QSHQLQLPQF QPPSPPAAYF DNNLPFGVAI TGSNDDNSSI AGGDVMGDHS 360 VISFGLTSEG SVTMHAGSRR RLVDFLGVDH DAGEVEELDH HLPLSTAVSR AACCATDFGR 420 RLPPVNETWS HNF

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MLLSDLSSDQ ESNSQGTSHN HMVLSPDLFL PSMATILHLP PVITLPPEEP KTKKKRSLPG  60
NPDPEAEVIA LSPRALVATN RFICEVCNKG FQRDQNLQLH RRGHNLPWKL SSSRQKQNQN  120
QNQQQQPASA AAAASSRKRV YVCPEATCVH HDPARALGDL TGIKKHYSRK HGEKRWRCER  180
CGKRYAVCSD WKAHVKNCGT REYRCDCGIL FSRKDSLLTH RAFCDALAEE SARILAAAAA  240
NNNSSSITTC NNISSIISHN NNINSSCSNN NNLLITTTTS SSSPPLFLPF STPAVENPNP  300
TNPLLFLQQH QSHQLQLPQF QPPSPPAAYF DNNLPFGVAI TGSNDDNSSI AGGDVMGDHS  360
VISFGLTSEG SVTMHAGSRR RLVDFLGVDH DAGEVEELDH HLPLSTAVSR AACCATDFGR  420
RLPPVNETWS HNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-31	172	243	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-31	172	243	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269\|PubMed:18725639, ECO:0000269\|PubMed:18774969, ECO:0000269\|PubMed:18790997, ECO:0000269\|PubMed:24280027, ECO:0000303\|PubMed:19304997}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00673	SELEX	Transfer from GRMZM2G011357	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G07370.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269\|PubMed:25036785, ECO:0000269\|PubMed:25573482, ECO:0000269\|PubMed:25850808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614407.1	1e-167	protein indeterminate-domain 12
Swissprot	B1B534	1e-168	EHD2_ORYSJ; Protein EARLY HEADING DATE 2
TrEMBL	A0A0D9XJS2	0.0	A0A0D9XJS2_9ORYZ; Uncharacterized protein
STRING	LPERR10G07370.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13096	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-84	C2H2-like zinc finger protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Park SJ, et al. Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod. Plant J., 2008. 56(6): p. 1018-29 [PMID:18774969] Song Y,Gao Z,Luan W Interaction between temperature and photoperiod in regulation of flowering time in rice. Sci China Life Sci, 2012. 55(3): p. 241-9 [PMID:22527521] Hu S, et al. A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7. Rice (N Y), 2013. 6(1): p. 24 [PMID:24280027] Cai Y, et al. Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice. PLoS ONE, 2014. 9(7): p. e102529 [PMID:25036785] Yoshitake Y, et al. The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice. Sci Rep, 2015. 5: p. 7709 [PMID:25573482] Han SH,Yoo SC,Lee BD,An G,Paek NC Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod. Plant Cell Environ., 2015. 38(12): p. 2527-40 [PMID:25850808] Jin J, et al. MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice. Plant Physiol., 2015. 168(4): p. 1275-85 [PMID:25855537] Brambilla V,Gomez-Ariza J,Cerise M,Fornara F The Importance of Being on Time: Regulatory Networks Controlling Photoperiodic Flowering in Cereals. Front Plant Sci, 2017. 8: p. 665 [PMID:28491078]