PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G09060.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 291aa    MW: 32989.3 Da    PI: 6.3151
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G09060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.46e-27149203156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k rl Wt +LH++F+ av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQkYRl+
  LPERR10G09060.1 149 KSRLSWTAQLHRQFIAAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQKYRLH 203
                      68*******************.********************************97 PP
2Response_reg34.51.1e-12117544109
                      ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  44 pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                       Dli+ D+  p+ dGl +l+e +++   +p +++ ++++ +++ +++  Ga dfl Kp+ +eel++
  LPERR10G09060.1  11 LDLIISDVFFPTEDGLLILQEVTTKF-GIPTVIMASSADASTVMKYVANGAADFLLKPVRIEELRN 75 
                      69********************9999.999999999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011020.896181IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-171195No hitNo description
PfamPF000725.0E-91176IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.98E-151191IPR011006CheY-like superfamily
CDDcd001569.71E-111281No hitNo description
PROSITE profilePS5129413.564146205IPR017930Myb domain
SuperFamilySSF466891.88E-19147206IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-27148206IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-25149203IPR006447Myb domain, plants
PfamPF002493.6E-7151201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSFISGNLPG LDLIISDVFF PTEDGLLILQ EVTTKFGIPT VIMASSADAS TVMKYVANGA  60
ADFLLKPVRI EELRNIWQHV FRKQMREHNN NNIMVGNNLE RSYPPPPIAM APAATTRTAA  120
EASTPQEISE VRDINSNNGE ITDIRDLRKS RLSWTAQLHR QFIAAVNHLG EDKAVPKKIL  180
GIMKVKHLTR EQVASHLQKY RLHLKKSIPS TSRDGTTLPS TALNTQNHPS RSKYFDQDVC  240
MEITDYSLPK DDLSSGSECK LEEQNDYSLE DFQDFRWDSD KQEYGPCFWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18148206462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G09060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876814.11e-158two-component response regulator ORR30
SwissprotQ7Y0W31e-160EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A0D9XKD00.0A0A0D9XKD0_9ORYZ; Uncharacterized protein
STRINGLPERR10G09060.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-45response regulator 2