PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G09740.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 203aa    MW: 22374 Da    PI: 4.6368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G09740.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.65.7e-11128102129
              NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                      ++ktLvfy grap+g+kt+Wvmhe+rle
  LPERR10G09740.2   1 MRKTLVFYLGRAPNGHKTTWVMHEFRLE 28 
                      89***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.451146IPR003441NAC domain
SuperFamilySSF1019411.7E-15146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRKTLVFYLG RAPNGHKTTW VMHEFRLETP NSQPKEDWVL CRVFDKKKPS STTEAEQGSD  60
IFITNTGGSI DPSSPTMTTA PLLGSSPDPT VVDRFDHQST VLEPSMLLMQ GGGDHMIAGN  120
NNHCSNSALL NLAMLQYNFV DQPPGDDVAV GTHFDACHGG GDDATMALRM GLEEHGMGEI  180
IEIEPTWRQG GNNCLYRDEL YFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G09740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195587e-46AK119558.1 Oryza sativa Japonica Group cDNA clone:002-106-A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613250.11e-104protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A0D9XKL51e-151A0A0D9XKL5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9XKL61e-151A0A0D9XKL6_9ORYZ; Uncharacterized protein
STRINGLPERR10G09740.11e-151(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-22NAC domain containing protein 74