PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G09970.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 409aa    MW: 45184.2 Da    PI: 9.323
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G09970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.5e-24140241199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  LPERR10G09970.2 140 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 229
                      89****************************996555555..8999*********************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  LPERR10G09970.2 230 RVGELCVGIRRA 241
                      79999****997 PP
2Auxin_resp118.45.7e-39297380183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++Fev Y+Prast+eFvvk+ +v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  LPERR10G09970.2 297 AASLAANGQPFEVAYYPRASTPEFVVKATSVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 380
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-36134243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-28136243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-21139240No hitNo description
SMARTSM010191.2E-21140242IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675140242IPR003340B3 DNA binding domain
PfamPF023628.4E-22140241IPR003340B3 DNA binding domain
PfamPF065076.4E-34297380IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEEERCLDPQ LWHACAGGMV QMPAARSRVY YFAQGHAEHA NGGGAAAELA AAAPRALRRN  60
EWYKKGNYGE ALRHXRALPP LVLCRVDGVR FLADPDTDEV FAKIRLSPVS PAEVDFRDSP  120
EQLCPLAGGD GESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV  180
LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR VGELCVGIRR  240
AKRVACGGME CMSGWNAPGY GGFSAFLKEE ESKLMKGAGG GYMRGRGKVK IADVVEAASL  300
AANGQPFEVA YYPRASTPEF VVKATSVQAA MRIQWCSGMR FKMAFETEDS SRISWFMGTI  360
SSVQVADPNR WPNSPWRLLQ HPNRSHATTY LRSDVTPLHP AFTSVHMKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-72738051367Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G09970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234830.10.0auxin response factor 22
RefseqXP_015614842.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A0D9XKQ20.0A0A0D9XKQ2_9ORYZ; Auxin response factor
STRINGLPERR10G09970.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-151auxin response factor 10
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]