PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G10860.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 236aa MW: 24220.2 Da PI: 9.1006

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G10860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.9	9.4e-33	76	132	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++ k++ LPERR10G10860.1 76 PRQCPRCGSSNTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNTKRA 132 679***********************************************9988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.5E-30	77	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.487	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-23	82	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MSSPFIASSA SSSAPLSYLT PPRPPPPPLL MGQGYGAVDG GFGVPDTGVD AVNVVAPAVR 60 QSGRHAGHPP LPRPPPRQCP RCGSSNTKFC YYNNYSRTQP RYLCKACRRH WTEGGTLRDV 120 PVGGGRKNTK RAPSAAAKAK AAAASVASSS SATSSFPDIL RQMLFSPAAA TGGGGGYSID 180 MAAWQQMAAF AGTPDQGGVC DVGGVVGGTA AAADCGGVQY WNGWLQDDMP GLDRSC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G10860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070563	1e-91	AK070563.1 Oryza sativa Japonica Group cDNA clone:J023060H13, full insert sequence.
GenBank	AK109091	1e-91	AK109091.1 Oryza sativa Japonica Group cDNA clone:002-155-A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614315.1	2e-56	dof zinc finger protein 1-like
TrEMBL	A0A0D9XL26	1e-169	A0A0D9XL26_9ORYZ; Uncharacterized protein
STRING	LPERR10G10860.1	1e-170	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-23	Dof family protein