PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G11890.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 1767aa    MW: 192678 Da    PI: 7.0637
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G11890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-0617441766225
                       -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH    2 ktelCrffartGtCkyGdrCkFaH 25  
                       k+ +Cr f+++G+C++G +C++ H
  LPERR10G11890.1 1744 KRGICR-FYENGYCRRGTSCQYQH 1766
                       7789**.6666************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.1E-8133190IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.15E-7133186IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002491.6E-6139185IPR001965Zinc finger, PHD-type
CDDcd155683.36E-20139184No hitNo description
PROSITE patternPS013590140200IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475929.81E-21368447IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.2E-25368451IPR003121SWIB/MDM2 domain
PfamPF022018.2E-16372445IPR003121SWIB/MDM2 domain
SMARTSM001510.0062372450IPR019835SWIB domain
SMARTSM007199.9E-42503627IPR004343Plus-3 domain
SuperFamilySSF1590421.57E-27503644IPR004343Plus-3 domain
PROSITE profilePS5136025.895503650IPR004343Plus-3 domain
PfamPF031268.4E-22508626IPR004343Plus-3 domain
SuperFamilySSF552774.05E-14787848IPR003169GYF domain
PROSITE profilePS5082913.575793845IPR003169GYF domain
SMARTSM004441.4E-12794847IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.8E-14795848IPR003169GYF domain
PfamPF022135.3E-8796835IPR003169GYF domain
PROSITE profilePS5010314.47417421767IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-517441766IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-417441766IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1767 aa     Download sequence    Send to blast
MDGGPGQGAE LLSPGEAEWP PELRLPPPPP PLEPPPPPST PQLRGEPSPP PPPPPSASAA  60
APPPRHSEGF DDSQFLGSIM GASPAAASHQ QQSVAAAAVE QPVVVKRKRG RPPKNRDAAA  120
AAAAAAPPKP VKEDNEEVVC FICFDGGNLV VCDRRGCTKV YHPACIKRDE SFFRSRGKWN  180
CGWHICSSCE KAVHYMCYTC TYSLCKGCIK QGKFFGVRGN KGFCDTCYST ILLIESKDED  240
AAKIKVDFDD KNSWEYLFKL YWLDLKGKHS LTLEELMNAK SCWTVRSTSA RREKEESSND  300
LYDANDDLDA SSDGSSRKRK RSCSSGRRGR KRQANGAITA REREISIKVA ESLPKRAAKD  360
GMTFRGDTQW ASSELLEFIG HMRNGDISYI SQFDVQVLLL EYIKQNNLRD PRRKSQIICD  420
ARLNNLFRKP HVGHFEMLKL LEMHFHAKET VNGDSQKAID PGSAQVDSGG YNDMASKLSS  480
DKRRKVHKKV ERESPDKLEN YAAIDMHNIN LIYLRRSLLE DLIDENGTFS DKIAGTFVRI  540
RTGVGQKQDM YRLVKVLGEI FTTTDVTTNS HVSTHKVAER YSVGKKTTDR ALEILNLDKK  600
EIITMDTISN QDFTEDECKR LRQSMKCGLI TQLKVGDIHK KAKVFQLQRV NDCVEKLQLL  660
STPEERARRI NEDPEVHVDP SMAPNYESAD ELDVKNAVDW TSRNGSDLLF HGRKGTETNF  720
MQNHTQSCFN TNHQTTISPP TEGVTHRPVE GNLSLLSTNG CDIPEPSIDL NNILCETASL  780
SSSEVVSGEM EPEKVWHYKD PSGNVQGPFT LLQLSKWVSH FPRDLRIWLT FESERSSLLL  840
TEVLSKQQKD FIQPSPEVDN NKSTWEGIGQ DRVNSSLAGS NSSSPIDYNV TYSSRLPSPP  900
ADCSVSAREG PNFPGGPSPF MTSWKPKKDD QILHGQTQHQ GNYSHTITSS VVSYGPAGTC  960
DEWPPQGNSD EWNNRQDSGG MWSPTTPHTS RSNLEHRPDR CITKTQLQND SDRKSLAGPA  1020
ENLLQLSIAS AKPESCCPVK PIEDGDSRSA SRVLNQSGAP FYIPQSAPAS SNLSKSEETM  1080
NQCKPCEPKA SNKSCEPDAS NAPANQPPKP EDDPVYTEDF DSTHPCPAPE HDTKEVLKDR  1140
LGSTSVAPDE STTKAHEQSS TAFVSETSGP PSGKTDGLQQ PKDTSFLLER DLKAGDSITR  1200
TEQLKEGSTT FKRENMTVNP ISDTEAIVSG VLGSLTETYN LHEETPLENF TPTSAEEEQP  1260
QCSSPIALSP WGEPSYYQGE AVDSALWGVQ DDQSNDMWSL SSPTPALQPS GLGANVKDAS  1320
RAIEEVIVAQ GNSAVVESSR TLEKQIEKVP SASTDCGVLE QVKPKPRASS SPEESAKLSG  1380
LQPSSTSLQG STKSAGLPLS GTSLERGTEP SGLPPSVTSL EWSTKVSGVQ SSRSSLEESK  1440
KALARQPSGS SLDENTKASG RQPSGSSIDG CKKPSDKQPS GASQEGNAKP TGWQPPVSSL  1500
EGGTKASGWK PSISVDVNTK ASGWQKSSSS PDGSRKASLW QSSGVSPMEG STKASGWQRS  1560
SSSPDGSKKA SVWQSSGLSP VEGSTKASGW QRSSSSPDGS RKASVWQSSG PSPVEGSTKA  1620
SGWQPSPRES SKPKQNSTWS SSQSRNSSST HQSTTPTAKY SSETPRRQGN SNSNTAGWGE  1680
ALGNNKNWNS SSGNATGRGS HHSSHHHDRH SQGSEPWRGS SNHSRRSDHR QDHGSGGSSR  1740
SSSKRGICRF YENGYCRRGT SCQYQHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G11890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0738670.0AC073867.6 Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614387.10.0zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBLA0A0D9XLG80.0A0A0D9XLG8_9ORYZ; Uncharacterized protein
STRINGLPERR10G11890.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-161nucleic acid binding;zinc ion binding;DNA binding