PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14070.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 211aa    MW: 23470.1 Da    PI: 9.98
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14070.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.1e-163176555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  LPERR10G14070.3 31 HNESERKRRDRINQKMKTLQKLVPNS-----SKADKASMLDEVINYLKQLQ 76
                     *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.6572675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-202998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-133176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-183187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-173180No hitNo description
SMARTSM003534.9E-183281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MCDEEENVVI KGEGAMRSSI STKRSRAAAI HNESERKRRD RINQKMKTLQ KLVPNSSKAD  60
KASMLDEVIN YLKQLQAQVQ VMSRMSSMMM PMGMAMPQLQ MSVMAQMAQM AQFGLSMMNM  120
GHQSGYPGLT PPMMHTPPFH LPVSSWDATA AGDRPPLQPI AGAAASDPFS AFLAAQQNAQ  180
QPPNSMEAYN RMMAMYQKLN QQQDQPSNSR Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14070.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879251e-141AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697075.19e-99PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ383e-39UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D9XMB51e-152A0A0D9XMB5_9ORYZ; Uncharacterized protein
STRINGLPERR10G14070.11e-147(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]