PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 209aa    MW: 21873.3 Da    PI: 9.3615
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-19147201256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee F+++++++ ++++ LA+ l+L+ rqV vWFqNrRa+ k
  LPERR10G14410.1 147 RKKLRLSKDQAAVLEETFKEHNTLNPKQKAALARDLKLKPRQVEVWFQNRRARTK 201
                      788899***********************************************98 PP
2HD-ZIP_I/II93.13.1e-30147206160
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlE 60 
                      +kk+rlsk+q+++LEe+F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E
  LPERR10G14410.1 147 RKKLRLSKDQAAVLEETFKEHNTLNPKQKAALARDLKLKPRQVEVWFQNRRARTKLKQTE 206
                      69*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-2611121IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.2E-19131197IPR009057Homeodomain-like
SuperFamilySSF466893.21E-18134204IPR009057Homeodomain-like
PROSITE profilePS5007116.844143203IPR001356Homeobox domain
SMARTSM003895.7E-16145207IPR001356Homeobox domain
PfamPF000461.9E-16147201IPR001356Homeobox domain
CDDcd000864.99E-15147204No hitNo description
PROSITE patternPS000270178201IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEMMVHGRRD DQHHLGLGLG LSLSLSLGAA ANDQPAAAAP RHVAAAAHVS PSPFFSDRRS  60
TAACHDEMIA PLPFLRGIDV NRTPAAAATA RGASCSEEEE ETGASSPNST LSSLSGKRGA  120
PAGSSRATAA GAGSDDEDSG GGGGGSRKKL RLSKDQAAVL EETFKEHNTL NPKQKAALAR  180
DLKLKPRQVE VWFQNRRART KLKQTEGAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151SRKKLRL
2195203RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}.
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}.
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662603.15e-64PREDICTED: homeobox-leucine zipper protein HOX1-like
SwissprotQ406911e-58HOX1_ORYSI; Homeobox-leucine zipper protein HOX1
SwissprotQ7XC541e-58HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1
TrEMBLA0A0D9XMH11e-148A0A0D9XMH1_9ORYZ; Uncharacterized protein
STRINGLPERR10G14410.11e-149(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.15e-29Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Scarpella E,Boot KJ,Rueb S,Meijer AH
    The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
    Plant Physiol., 2002. 130(3): p. 1349-60
    [PMID:12428000]
  2. Scarpella E,Rueb S,Meijer AH
    The RADICLELESS1 gene is required for vascular pattern formation in rice.
    Development, 2003. 130(4): p. 645-58
    [PMID:12505996]
  3. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  4. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  5. Scarpella E,Simons EJ,Meijer AH
    Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis.
    Plant Cell Physiol., 2005. 46(8): p. 1400-10
    [PMID:15964905]
  6. Meijer AH,Ouwerkerk PB,Hoge JH
    Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast.
    Yeast, 1998. 14(15): p. 1407-15
    [PMID:9848232]