PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 259aa    MW: 28721.1 Da    PI: 5.8044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-1694138347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky
  LPERR10G14440.1  94 PWTEEEHKKFLDGLRQLGKGDWRGISKNFVTTRTATQVASHAQKY 138
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.28587143IPR017930Myb domain
SuperFamilySSF466896.1E-1888142IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1890142IPR006447Myb domain, plants
SMARTSM007179.9E-1191141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1192138IPR009057Homeodomain-like
PfamPF002495.2E-1394138IPR001005SANT/Myb domain
CDDcd001671.87E-1094139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDQQQEEELK SPPVMFRLFG VDVRGGGGVD EEEYEEEEDG FPIKKSSSMP NLNSIDPPPA  60
DGGGKRRASD DSELASGQLK RRRRKVQERK KGIPWTEEEH KKFLDGLRQL GKGDWRGISK  120
NFVTTRTATQ VASHAQKYFL RQVNPGKKKR RASLFDVVAE YDDDQLPSPQ SVGTKPAPTQ  180
EIIHTDRGDV LIPSYPVARD YSGNSVQVDE HTEYVNRSKA AEEMSLSMIS GLEMASSSIS  240
SLELSIAPPY GAIGAIKVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16484KRRASDDSELASGQLKRRRRK
27984KRRRRK
37990KRRRRKVQERKK
48090RRRRKVQERKK
5146150KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212350.0AK121235.1 Oryza sativa Japonica Group cDNA clone:J023093N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662604.21e-143PREDICTED: transcription factor DIVARICATA-like
SwissprotB8BI931e-122MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC511e-122MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A0D9XMH40.0A0A0D9XMH4_9ORYZ; Uncharacterized protein
STRINGLPERR10G14440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-31MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]